U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2382294: Whole genome shotgun sequencing of Listeria monocytogenes serovar 1/2c by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 1.9M spots, 544.1M bases, 253.9Mb downloads

External Id: EXT00227708
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr project: University of Turin, Department of Veterinary Sciences, Italy
PRJNA304956 • SRP070119 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Listeria monocytogenes as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
Sample:
SAMN04417964 • SRS1296275 • All experiments • All runs
Organism: Listeria monocytogenes
Library:
Name: Listeria monocytogenes serovar 1/2c Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Listeria monocytogenes serovar 1/2c.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 1.9M spots, 544.1M bases, 253.9Mb
Run# of Spots# of BasesSizePublished
SRR50617871,860,539544.1M253.9Mb2016-11-29

ID:
3469763

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...